JISC has conducted an inventory of non-commercial digital repositories & archives — when you get to the JISC site, scroll to the foot of the page for links to the final report. (Tip o’ the hat to Library Intelligencer for this link.)
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One of the constraints on the JISC lists is that several of the self imposed limitation therein. Please note for example that Mike Brody’s excellent list at Southampton (home of ePrints)_ of OAI-PMH compliant systems simply can NOT list mny where the systems were developed by research people outside the library orbit, and thus not empowered to make the OAI PMH link openly visible..a criterion for listing.. I discovered this when trying to list three of my own repositories.. so there may well be many more not listed for similar reasons…