• bshaban
  1. Spartan Course Content

    Spartan workshop content:   https://github.com/UoM-ResPlat-DevOps/SpartanIntro https://github.com/UoM-ResPlat-DevOps/SpartanAdvanced https://github.com/UoM-ResPlat-DevOps/SpartanRegEx

    blogs.unimelb.edu.au/melb-int-gen/2020/02/19/spartan-course-content

  2. How to rename fastq headers i.e. remove duplicates

        [bobbieshaban@spartan-login1 analysis]$ cat hiseq_reads_R1.fastq | awk ‘{if(NR%4==1) $0=sprintf(“@1_%d”,(1+i++)); print;}’ | less [bobbieshaban@spartan-login1 analysis]$ cat hiseq_reads_R1.fastq | awk ‘{if(NR%4==1) $0=sprintf(“@1_%d”,(1+i++)); print;}’ > hiseq_R1.fastq [bobbieshaban@spartan-login1 analysis]$ …

    blogs.unimelb.edu.au/melb-int-gen/2019/05/21/how-to-rename-fastq-headers-i-e-remove-duplicates

  3. WDL/CWL Basics Tutorial – Parkville Data Management and Workflow Group

    Video recordings and slides from WDL/CWL presentation. WDL presentation video: https://www.youtube.com/watch?v=Qw67QU_dUV4&t=44s WDL Slides: WDL  

    blogs.unimelb.edu.au/melb-int-gen/2018/12/07/wdlcwl-basics-tutorial

  4. SumHer Workshop – How to install VirtualBox for Windows

      Instructions for installing VirtualBox on Windows and accessing the SumHer Ubuntu Virtual Machine can be downloaded here: Oracle virtual box – win instructions You can download …

    blogs.unimelb.edu.au/melb-int-gen/2018/12/04/sumher-workshop-how-to-install-virtualbox-for-windows

  5. Tutorial 9 – Git basics tutorial

    This tutorial will show the basics of Git. It will go through creating an account, creating a new repo, how to create a branch and how …

    blogs.unimelb.edu.au/melb-int-gen/2018/05/01/tutorial-9-git-basics-tutorial

  6. Tutorial 7 – HPC- Refresher 05/04/2018

    Tutorial 6 – HPC Refresher Tutorial notes and files for hpc refresher Tutorial7-HPC-Refresher SRR_1.zip Please unzip file SRR_1.zip before using in this tutorial. The video recording …

    blogs.unimelb.edu.au/melb-int-gen/2018/04/04/tutorial-6-05042018

  7. Tutorial 5 – 09/11/17 – Unix Commands

    Tutorial 5 – More unix commands Please download the following material. tute5.txt tute5.txt is not an actual text file, it is a tar. Please download, rename …

    blogs.unimelb.edu.au/melb-int-gen/2017/11/08/test

  8. Tutorial 4 – Linux command line 26/10/17

    This tutorial will go through some examples of some linux command line tools. Please download the tutorial notes and these files and place in a directory …

    blogs.unimelb.edu.au/melb-int-gen/2017/10/25/tutorial-4-linux-command-line-261017

  9. Installing R packages locally

    Installing R packages locally. Create .Revniron in your home directory Create directory /vlsci/SG000x/shared/rlibs/ – where x is your group id Add the following lines – change …

    blogs.unimelb.edu.au/melb-int-gen/2017/10/12/installing-r-packages-locally

  10. Tutorial 3 – Virtual box installation – 12/10/17

    This week’s tutorial will consist of installing Virtual Box and installing a virtual machine. This tutorial will be the prelude to further tutorials where we will …

    blogs.unimelb.edu.au/melb-int-gen/2017/10/10/tutorial-3-virtual-box-installation-121017

Number of posts found: 27